Self Assembly of RNA-Lipid Nanoparticles
Picture by T. H. Pial
Lipid nanoparticle self-assembly and growth. We strive to understand the kinetics of RNA-lipid nanoparticle self-assembly, how to kinetically control the assembly process to minimize LNP heterogeneity and obtain a homogenous population of nanoparticles. We also investigate PEI-DNA complexation for DNA delivery. We mainly employ analytical kinetic theory, kinetic Monte Carlo and molecular dynamics simulations. Our kinetic Monte Carlo code FormLNP for simulating LNP assembly is freely available here. Ongoing collaboration with experimental groups of Hai-Quan Mao, Tza-Huei Wang and Xizhen Lian.
Dynamic response and actution of polyelectrolytes and hydrogels
We are investigaing charge-structure coupling in nanoparticles and polyelectrolytes for designing e.g. soft-actuators for soft robotics, and investigate fundamental physics of collective ion transport at the nanoscale. We develop simulation methods that combine accurate long-range electrostatics with hydrodynamics and dynamic conformational response. The charge regulation solver is available as an open-source implementation of the charge-regulation solver for the LAMMPS molecular dynamics package.
Charge transport in conductive polymers for neuromorphic applications
Single polymer memristor
Designing superselective targeting in using multivalent nanoparticles and polymers
We investigate the interactions between nanoparticles and polymers binding to membrane receptors. The goal is to design selective target a specific membrane receptor composition using multiple simulatnous ligand-receptor bonds. Currently, our focus is on understanding the kinetics of multivalent interactions to design selective drug delivery vehicles for cell membrane targeting. Another interesting point is investigating how a combination of multivalency and kinetic proofreading gives rise to recognition that is both sensitive and specific.
Designing Organic electrochemical transistor biosensors
Many medical conditions can be detected or diagnosed by analyzing chemical compounds circulating in the bloodstream or that are in other body liquids.To confidently detect these proteins quickly and easily, electronic sensors are needed that signal when they are in contact with the proteins that indicate the medical condition of interest to a patient. One way to improve the certainty that a sensor signal is indicating the presence of a particular protein is to provide circuits that remove signals that come from other compounds in the liquids being analyzed, like salt, fats, and additional proteins. This project investigates a new circuit, constructed with new biologically-derived electronic materials, designed to remove these unwanted signals that make it more difficult to detect the proteins that indicate medical conditions. In collaboration with Howard Katz and Supported by NSF CBET award No. 2402407.
Optimal packing of DNA and RNA in confinement
The packing of DNA and dsRNA is crucial in viral assembly and DNA delivery. Using analytical calculations and MD simulations we show that DNA spontanously forms an ordering mosaic of multiple homogeneously ordered domains. We observe concentric spools, topological links and spool-nematic ordering.
These are a few highlighted research areas. For a full list of projects and work see the Publications section.